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Sample Size
•
reset
8
votes
17
replies
15k
views
WGCNA for RNA-Seq Sample Set, Outliers, and Spearman correlation
WGCNA
Sample Size
Outliers
updated 8.7 years ago by
mh.manoj
• 0 • written 9.3 years ago by
brohawndg
▴ 150
0
votes
9
replies
4.8k
views
DESeq2 unequal sample sizes
deseq2
deseq
sample size
6.6 years ago
MrHodor
• 0
3
votes
6
replies
1.4k
views
nbinomLRT function all cores usage
deseq2
nbinomLRT
sample size
biocparallel
updated 5.6 years ago by
davide risso
▴ 950 • written 5.6 years ago by
mcalgaro93
• 0
0
votes
5
replies
2.2k
views
getting sample size for RNAseq experiment
rnaseqpower
sspa
sample size
sequencing
complex-design
updated 8.3 years ago by
m.van_iterson
▴ 20 • written 8.3 years ago by
roser.navarro
• 0
4
votes
5
replies
2.1k
views
sample size determination in microarrays studies with limma analysis
limma
sample size
microarrays
statistical power
6.1 years ago
eleonoregravier
▴ 70
0
votes
4
replies
899
views
DESeq2: Small treatment group, large control group
deseq2
sample size
updated 5.5 years ago by
Michael Love
42k • written 5.5 years ago by
kel.chee86
• 0
3
votes
3
replies
1.6k
views
csaw: how does unequal sample size affect filtering filterWindows step
csaw
differential binding analysis
sample size
independent filtering
statistical power
updated 6.7 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
zhangly811
• 0
4
votes
1
reply
1.8k
views
Very low EdgeR Pvalues with very small sample size
edger
pvalue
sample size
updated 8.0 years ago by
Aaron Lun
★ 28k • written 8.0 years ago by
Venu Pullabhatla
▴ 40
0
votes
0
replies
1.6k
views
ATAC-seq: Sample size when pooling sample reads to call peaks
atac-seq
sample size
Peak
Normalize
6.3 years ago
jaime.alvarez.benayas
• 0
9 results • Page
1 of 1
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Comment: Volcano plot of scRNA-seq data not "centered"
by
tjl
• 0
Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…
Answer: GSVA function
by
Robert Castelo
★ 3.3k
Hi, We recommend to input normalized expression values in logarithmic scale to GSVA. We also recommend to use the latest release of the …
Comment: Cannot install oligo on Fedora
by
Guido Hooiveld
★ 4.0k
Aha, that is a good one! Starting from release 40, as I just found out, Fedora apparently is not including/using `zlib` as such anymore, b…
Votes
Answer: How to run allelic imbalance in apeglm
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Answer: Documenting resources in an `ExperimentHub` package?
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Seurat/DESeq2 - single cell RNA-seq differential expression
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